diff --git a/OMEGA.bib b/OMEGA.bib index f2a8356..72cb2b4 100644 --- a/OMEGA.bib +++ b/OMEGA.bib @@ -111603,4 +111603,79 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a nlmuniqueid = {8809320} } -@Comment{jabref-meta: databaseType:bibtex;} +@article{Vanni2014, + title = {Mesoscale transcranial spontaneous activity mapping in GCaMP3 transgenic mice reveals extensive reciprocal connections between areas of somatomotor cortex.}, + author = {Vanni, Matthieu P and Murphy, Timothy H}, + journal = {J Neurosci}, + volume = {34}, + number = {48}, + year = {2014}, + month = {Nov}, + pages = {15931-46}, + abstract = {Transgenic mice expressing genetically encoded activity indicators are an attractive means of mapping mesoscopic regional functional cortical connectivity given widespread stable and cell-specific expression compatible with chronic recordings. Cortical functional connectivity was evaluated using wide-field imaging in lightly anesthetized Emx1-creXRosa26-GCaMP3 mice expressing calcium sensor in cortical neurons. Challenges exist because green fluorescence signals overlap with endogenous activity-dependent autofluorescence and are affected by changes in blood volume and oxygenation. Under the conditions used for imaging and analysis (0.1-1 Hz frequency band), autofluorescence and hemodynamic effects contributed 3% and 8% of the SD of spontaneous activity-dependent GCaMP3 fluorescence when signals were recorded through intact bone. To evaluate the accuracy and sensitivity of this approach, the topology of functional connections between somatomotor cortex (primary S1 and secondary S2 somatosensory, and primary motor cortex M1) was estimated. During sequences of spontaneous activity, calcium signals recorded at each location of area S1 were correlated with activity in contralateral area S1, ipsilateral area S2, and bilateral areas M1. Reciprocal results were observed when "seed pixels" were placed in S2 and M1. Coactivation of areas implies functional connections but could also be attributed to both regions receiving common upstream drive. These apparent connections revealed during spontaneous activity coactivation by GCaMP3 were confirmed by intracortical microstimulation but were more difficult to detect using intrinsic signals from reflected red light. We anticipate GCAMP wide-field imaging will enable longitudinal studies during plasticity paradigms or after models of CNS disease, such as stroke, where the weighting within these connectivity maps may be altered. }, + keywords = {connectome; cortical stimulation; optogenetic; resting state; tracing; transgenic mice; Animals; Brain Mapping; Calcium Signaling; Female; Male; Mice; Mice, 129 Strain; Mice, Transgenic; Motor Cortex; Neural Pathways; Somatosensory Cortex; }, + pubmed = {25429135}, + pii = {34/48/15931}, + doi = {10.1523/JNEUROSCI.1818-14.2014}, + url = {https://www.ncbi.nlm.nih.gov/pubmed/25429135}, + file = {papers/Vanni_JNeurosci2014-25429135.pdf}, + nlmuniqueid = {8102140} +} + +@article{Waters2019, + title = {Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse.}, + author = {Waters, Jack and Lee, Eric and Gaudreault, Nathalie and Griffin, Fiona and Lecoq, Jerome and Slaughterbeck, Cliff and Sullivan, David and Farrell, Colin and Perkins, Jed and Reid, David and Feng, David and Graddis, Nile and Garrett, Marina and Li, Yang and Long, Fuhui and Mochizuki, Chris and Roll, Kate and Zhuang, Jun and Thompson, Carol}, + journal = {PLoS One}, + volume = {14}, + number = {5}, + year = {2019}, + pages = {e0213924}, + abstract = {Visual cortex is organized into discrete sub-regions or areas that are arranged into a hierarchy and serves different functions in the processing of visual information. In retinotopic maps of mouse cortex, there appear to be substantial mouse-to-mouse differences in visual area location, size and shape. Here we quantify the biological variation in the size, shape and locations of 11 visual areas in the mouse, after separating biological variation and measurement noise. We find that there is biological variation in the locations and sizes of visual areas.}, + pubmed = {31042712}, + doi = {10.1371/journal.pone.0213924}, + pii = {PONE-D-18-29482}, + pmc = {PMC6493719}, + url = {https://www.ncbi.nlm.nih.gov/pubmed/31042712}, + file = {}, + nlmuniqueid = {101285081} +} + +@article{Ghanbari2019, + title = {Cortex-wide neural interfacing via transparent polymer skulls.}, + author = {Ghanbari, Leila and Carter, Russell E and Rynes, Mathew L and Dominguez, Judith and Chen, Gang and Naik, Anant and Hu, Jia and Sagar, Md Abdul Kader and Haltom, Lenora and Mossazghi, Nahom and Gray, Madelyn M and West, Sarah L and Eliceiri, Kevin W and Ebner, Timothy J and Kodandaramaiah, Suhasa B}, + journal = {Nat Commun}, + volume = {10}, + number = {1}, + year = {2019}, + month = {04}, + pages = {1500}, + abstract = {Neural computations occurring simultaneously in multiple cerebral cortical regions are critical for mediating behaviors. Progress has been made in understanding how neural activity in specific cortical regions contributes to behavior. However, there is a lack of tools that allow simultaneous monitoring and perturbing neural activity from multiple cortical regions. We engineered 'See-Shells'-digitally designed, morphologically realistic, transparent polymer skulls that allow long-term (>300 days) optical access to 45 mm2 of the dorsal cerebral cortex in the mouse. We demonstrate the ability to perform mesoscopic imaging, as well as cellular and subcellular resolution two-photon imaging of neural structures up to 600 µm deep. See-Shells allow calcium imaging from multiple, non-contiguous regions across the cortex. Perforated See-Shells enable introducing penetrating neural probes to perturb or record neural activity simultaneously with whole cortex imaging. See-Shells are constructed using common desktop fabrication tools, providing a powerful tool for investigating brain structure and function.}, + pubmed = {30940809}, + doi = {10.1038/s41467-019-09488-0}, + pii = {10.1038/s41467-019-09488-0}, + pmc = {PMC6445105}, + url = {https://www.ncbi.nlm.nih.gov/pubmed/30940809}, + file = {papers/Ghanbari_NatCommun2019-30940809.pdf}, + nlmuniqueid = {101528555} +} + +@article{Scott2016, + title = {Longitudinal analysis of the developing rhesus monkey brain using magnetic resonance imaging: birth to adulthood.}, + author = {Scott, Julia A and Grayson, David and Fletcher, Evan and Lee, Aaron and Bauman, Melissa D and Schumann, Cynthia Mills and Buonocore, Michael H and Amaral, David G}, + journal = {Brain Struct Funct}, + volume = {221}, + number = {5}, + year = {2016}, + month = {06}, + pages = {2847-71}, + abstract = {We have longitudinally assessed normative brain growth patterns in naturalistically reared Macaca mulatta monkeys. Postnatal to early adulthood brain development in two cohorts of rhesus monkeys was analyzed using magnetic resonance imaging. Cohort A consisted of 24 rhesus monkeys (12 male, 12 female) and cohort B of 21 monkeys (11 male, 10 female). All subjects were scanned at 1, 4, 8, 13, 26, 39, and 52 weeks; cohort A had additional scans at 156 weeks (3 years) and 260 weeks (5 years). Age-specific segmentation templates were developed for automated volumetric analyses of the T1-weighted magnetic resonance imaging scans. Trajectories of total brain size as well as cerebral and subcortical subdivisions were evaluated over this period. Total brain volume was about 64 % of adult estimates in the 1-week-old monkey. Brain volume of the male subjects was always, on average, larger than the female subjects. While brain volume generally increased between any two imaging time points, there was a transient plateau of brain growth between 26 and 39 weeks in both cohorts of monkeys. The trajectory of enlargement differed across cortical regions with the occipital cortex demonstrating the most idiosyncratic pattern of maturation and the frontal and temporal lobes showing the greatest and most protracted growth. A variety of allometric measurements were also acquired and body weight gain was most closely associated with the rate of brain growth. These findings provide a valuable baseline for the effects of fetal and early postnatal manipulations on the pattern of abnormal brain growth related to neurodevelopmental disorders.}, + keywords = {Allometry; Development; Macaca mulatta; Nonhuman primate; Sexual dimorphism; Animals; Brain; Female; Functional Laterality; Image Processing, Computer-Assisted; Longitudinal Studies; Macaca mulatta; Magnetic Resonance Imaging; Male; }, + pubmed = {26159774}, + doi = {10.1007/s00429-015-1076-x}, + pii = {10.1007/s00429-015-1076-x}, + pmc = {PMC4884209}, + url = {https://www.ncbi.nlm.nih.gov/pubmed/26159774}, + file = {papers/Scott_BrainStructFunct2016-26159774.pdf}, + nlmuniqueid = {101282001} +} +